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DADP: the database of anuran defense peptides.

M. NovkoviÄ
•
J. SimuniÄ
•
V. BojoviÄ
altro
D. JuretiÄ
2012
  • journal article

Periodico
BIOINFORMATICS
Abstract
SUMMARY: Anuran tissues, and especially skin, are a rich source of bioactive peptides and their precursors. We here present a manually curated database of antimicrobial and other defense peptides with a total of 2571 entries, most of them in the precursor form with demarcated signal peptide (SP), acidic proregion(s) and bioactive moiety(s) corresponding to 1923 non-identical bioactive sequences. Search functions on the corresponding web server facilitate the extraction of six distinct SP classes. The more conserved of these can be used for searching cDNA and UniProtKB databases for potential bioactive peptides, for creating PROSITE search patterns, and for phylogenetic analysis.
DOI
10.1093/bioinformatics/bts141
WOS
WOS:000304053300019
Archivio
http://hdl.handle.net/11368/2558683
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-84861162217
Diritti
metadata only access
Soggetti
  • amphibian

  • antimicrobial peptide...

  • bioactive peptide

  • database

Web of Science© citazioni
128
Data di acquisizione
Mar 21, 2024
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