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High-Dimensional Fluctuations in Liquid Water: Combining Chemical Intuition with Unsupervised Learning

Offei-Danso, Adu
•
Hassanali, Ali
•
Rodriguez, Alejandro
2022
  • journal article

Periodico
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
Abstract
The microscopic description of the local structure of water remainsan open challenge. Here, we adopt an agnostic approach to understanding water'shydrogen bond network using data harvested from molecular dynamics simulationsof an empirical water model. A battery of state-of-the-art unsupervised data-sciencetechniques are used to characterize the free-energy landscape of water starting fromencoding the water environment using local atomic descriptors, throughdimensionality reduction andfinally the use of advanced clustering techniques.Analysis of the free energy under ambient conditions was found to be consistentwith a rough single basin and independent of the choice of the water model. Wefind that thefluctuations of the water network occur in a high-dimensional space,which we characterize using a combination of both atomic descriptors andchemical-intuition-based coordinates. We demonstrate that a combination of bothtypes of variables is needed in order to adequately capture the complexity of thefluctuations in the hydrogen bond network atdifferent length scales both at room temperature and also close to the critical point of water. Our results provide a general frameworkfor examiningfluctuations in water under different conditions.
DOI
10.1021/acs.jctc.1c01292
WOS
WOS:000801046200033
Archivio
https://hdl.handle.net/11368/3034883
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85126678218
https://pubs.acs.org/doi/10.1021/acs.jctc.1c01292
Diritti
open access
license:copyright editore
license:copyright editore
license:digital rights management non definito
license uri:iris.pri02
license uri:iris.pri02
license uri:iris.pri00
FVG url
https://arts.units.it/request-item?handle=11368/3034883
Soggetti
  • Hydrogen Bonding

  • Molecular Dynamics Si...

  • Unsupervised Machine ...

  • Intuition

  • Water

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