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Analysis and characterization of the head kidney transcriptome from the Antarctic fish Trematomus bernacchii (Teleostea, Notothenioidea): A source for immune relevant genes

GERDOL, MARCO
•
Buonocore, Francesco
•
Scapigliati, Giuseppe
•
PALLAVICINI, Alberto
2015
  • journal article

Periodico
MARINE GENOMICS
Abstract
In this study we describe the de novo assembled head kidney transcriptome of the Antarctic notothenioid fish Trematomus bernacchii, an important model species for biochemical, environmental and immunological studies. RNA-seq data was generated using Illumina paired-end sequencing, obtaining ~. 7. Gbp of sequence data, which were assembled into 96,641 contigs and annotated with the Trinotate pipeline. Since this sequence collection is expected to contain a relevant number of immunity-related transcripts, it will be used as a reference for future immunological studies in this species.
DOI
10.1016/j.margen.2014.12.005
WOS
WOS:000352666200005
Archivio
http://hdl.handle.net/11368/2833451
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-84924974924
http://www.sciencedirect.com/science/journal/18747787/20/supp/C
Diritti
closed access
license:digital rights management non definito
FVG url
https://arts.units.it/request-item?handle=11368/2833451
Soggetti
  • Head kidney

  • Immunity

  • Notothenioid

  • RNA-seq

  • Transcriptome

  • Aquatic Science

  • Genetics

Web of Science© citazioni
25
Data di acquisizione
Mar 28, 2024
Visualizzazioni
3
Data di acquisizione
Jun 8, 2022
Vedi dettagli
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