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Structured motifs search

MORGANTE, Michele
•
POLICRITI, Alberto
•
VITACOLONNA, Nicola
•
ZUCCOLO, Andrea
2005
  • journal article

Periodico
JOURNAL OF COMPUTATIONAL BIOLOGY
Abstract
In this paper, we describe an algorithm for the localization of structured models, i.e. sequences of (simple) motifs and distance constraints. It basically combines standard pattern matching procedures with a constraint satisfaction solver, and it has the ability, not present in similar tools, to search for partial matches. A significant feature of our approach, especially in terms of efficiency for the application context, is that the (potentially) exponentially many solutions to the considered problem are represented in compact form as a graph. Moreover, the time and space necessary to build the graph are linear in the number of occurrences of the component patterns.
WOS
WOS:000233288200002
Archivio
http://hdl.handle.net/11390/878867
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-27644503572
Diritti
closed access
Soggetti
  • structured motif

  • string algorithm

  • computational complex...

  • TRANSPOSABLE ELEMENTS...

Visualizzazioni
1
Data di acquisizione
Apr 19, 2024
Vedi dettagli
google-scholar
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