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A Temporal Logic Approach to Modular Design of Synthetic Biological Circuits

Ezio Bartocci
•
BORTOLUSSI, LUCA
•
Laura Nenzi
2013
  • conference object

Periodico
LECTURE NOTES IN COMPUTER SCIENCE
Abstract
We present a new approach for the design of a synthetic biological circuit whose behaviour is specified in terms of signal temporal logic (STL) formulae. We first show how to characterise with STL formulae the input/output behaviour of biological modules miming the classical logical gates (AND, NOT, OR). Hence, we provide the regions of the parameter space for which these specifications are satisfied. Given a STL specification of the target circuit to be designed and the networks of its constituent components, we propose a methodology to constrain the behaviour of each module, then identifying the subset of the parameter space in which those constraints are satisfied, providing also a measure of the robustness for the target circuit design. This approach, which leverages recent results on the quantitative semantics of Signal Temporal Logic, is illustrated by synthesising a biological implementation of an half-adder.
DOI
10.1007/978-3-642-40708-6_13
WOS
WOS:000342772500018
Archivio
http://hdl.handle.net/11368/2718689
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-84886003781
Diritti
metadata only access
Soggetti
  • Synthetic Biology

  • Parameter Synthesi

  • Temporal Logic

Scopus© citazioni
27
Data di acquisizione
Jun 7, 2022
Vedi dettagli
Visualizzazioni
1
Data di acquisizione
Apr 19, 2024
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